PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01571.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 430aa    MW: 45556.8 Da    PI: 9.5703
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01571.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.41.3e-30188264681
                           TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                                    rh ++hTkv+gR+RR+Rl   caar+  L++eLG++ d++ti WLlqq++pa++++tgt++ +  ++  +++++  
  Zmw_sc01571.1.g00090.1.am.mk 188 PRHRDRHTKVEGRGRRIRLAEACAARIARLTRELGHKNDGETIRWLLQQSEPAVIAATGTGTVPXXAAvADGDQQPD 264
                                   69**********************************************************88888444222222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-24190255IPR005333Transcription factor, TCP
PROSITE profilePS5136921.597190244IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MVQKIIETEQ KSKSRTRPKT GAAKSKQRRR IEEAGARDES ASSPNPISLG VAXXXISSGP  60
VGRLPLNPTL RDPLSQRRSK NRSRELAQRR APPNQNKGAE SKKPERETKA RLAPIRSPLE  120
SRAPDMGEED VAAFYHAAGN GTAVTDAAVV GIDAMGSSEA HGSLMPKPEP APVEFLGELQ  180
VANPRPAPRH RDRHTKVEGR GRRIRLAEAC AARIARLTRE LGHKNDGETI RWLLQQSEPA  240
VIAATGTGTV PXXAAVADGD QQPDPKRRRK LQPTRAAAAG ATAPPLTSTP TAYYPVVADP  300
LLQGNGGGAI STSSGLAPAS VPTPPPGAIP FLAIPAPGPG ATIDGKQMMK PTAVWMVPPQ  360
AGAGGAANQP THYWAFPTNP ELFGNFQQQA VYDAGQLVDG GESQHQQLEG HQDGEGEEED  420
IALTESSSEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270PKRRRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462687.11e-118hypothetical protein SORBIDRAFT_02g030260
SwissprotA2YXQ17e-72PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH67e-72PCF2_ORYSJ; Transcription factor PCF2
TrEMBLC5X6211e-118C5X621_SORBI; Putative uncharacterized protein Sb02g030260
STRINGSb02g030260.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167